Regulated Operon: rok

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
rok ykuW + 1493094..1493669

 

Operon evidence: Genome analysis
Reference: Hoa TT, et al. (2002)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative ND ND ND Hoa TT, et al. (2002): RG DB
ComK Negative ND 1492948..1492968 TGAAAAATAAAACATTTTCAG Hoa TT, et al. (2002): GS RG DB
ComK Negative ND 1492968..1492984 GAAAATAAGGAATTTTT Hoa TT, et al. (2002): GS RG DB
Rok Negative ND ND ND Hoa TT, et al. (2002): GS RG DB
Albano M, et al. (2005): GS
SinR Negative ND ND ND Hoa TT, et al. (2002): RG DB
Hahn J, et al. (1994): DB
Van Sinderen D & Venema G (1994): RG DB; Western blot

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
AAAAACTGCTTGGCATCGCTCAAGCAGTTTTTTTATTGAGGT
     >>>>>>>>>   <<<<<<<<<<
1493683..1493704
14..35
-13.0
 rok

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai