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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sboAX-albABCDEFG |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| sboA | sbo | + | 3835081..3835212 | subtilosin A | ||
| sboX | + | 3835169..3835321 | bacteriocin-like product | |||
| albA | ywiA | + | 3835346..3836692 | COG0535 | ||
| albB | ywhR | + | 3836705..3836866 | |||
| albC | ywhQ | + | 3836863..3837582 | COG1131 | ||
| albD | ywhP | + | 3837575..3838885 | |||
| albE | ywhO | + | 3838875..3840035 | COG0612 | ||
| albF | ywhN | + | 3840040..3841320 | COG0612 | ||
| albG | ywhM | + | 3841317..3842018 |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | Zheng G, et al. (1999), Genbank Z97024 |
| Comments: | The terminator structure proposed in Genbank Z97024 lacks a T-stretch. The secondary structure downstream of sboA may function as a readthrough terminator. |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | ND | ND | ND |
Zheng G, et al. (2000): DB |
| ResD | Positive | ND | ND | ND |
Nakano MM, et al. (2000): DB Nakano MM, et al. (2001): RG |
| Rok | Negative | ND | ND | ND |
Albano M, et al. (2005): RG AR DB GS |
| SigA | Promoter | -45:+5 | 3834991..3835040 | AATATATGTATTGAATTAGTAATTTGATAGTTTTAAGATAAAAGTACAAC |
Zheng G, et al. (2000): PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CTATGGGGGTAAGGATCTCCCAAAAGGGCATAGTCATTCTACTATGCCCTTTTTAA >>>>>> <<<<<< |
sboX |
|