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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | sda |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| sda | + | 2646679..2646837 | sda-BAC |
| Operon evidence: | upstream and downstream genes are on the opposite strand |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| LexA | Negative | -47:-24 | 2646548..2646571 | ATAACAGAACGATTGTTCTTATAT |
Au N, et al. (2005): GS |
| DnaA | Negative | -146:-41 | 2646449..2646554 | AGGTGTGGATAAATTTACACACACTATCCACTCTTATTACATCACTCTTTAGACAAATTATAAACACGATACTCACAAGTTATCCACTTTTTGGTGTGGATAACAG |
Burkholder WF, et al. (2001): RG HM DB |
| SigA | Promoter | -42:+5 | 2646553..2646599 | AGAACGATTGTTCTTATATGCATTTCATGGTAGATTAAAGATAACTT |
Burkholder WF, et al. (2001): PE RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ACATATTATTTCCGTATCTTCTTAATAGGAATTTGTCTATTTTTTC >>>>>>> <<<<<<<<< |
sda |
|