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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | trxA |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| trxA | trx | - | 2912092..2912406 | thioredoxin | COG0526 | trxA-BAC-1 trxA-BAC-2 trxA-STA trxA-BAC-1 |
| Operon evidence: | Northern blot (0.6 kb transcript for the SigB promoter, 0.38 kb transcript for the SigA promoter) |
|---|---|
| Reference: | Scharf C, et al. (1998), Chen NY, et al. (1989) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CtsR | Negative | ND | ND | ND |
Kruger E, et al. (1998): DB |
| SigA | Promoter | -37:+20 | 2912417..2912473 | AAAATAGCGTGAACGAATGGGAGATGCTATACTAAAAATCATCATTTCACATTGGAG |
Scharf C, et al. (1998): PE, 2D-gel |
| SigB | Promoter | -40:+2 | 2912648..2912689 | TCAGGTTTTAAAACAGCTCCGGCAGGGCATGGTAAAGTACAT |
Scharf C, et al. (1998): PE, 2D-gel Petersohn A, et al. (1999): HB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| CCAGAGCGATTCCGATTGAGGGATCGCTTTTTTTATTCGCCA >>>>>>>> <<<<<<<< |
trxA |
|