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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ureABC |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ureA | - | 3767813..3768130 | urease (gamma subunit) | COG0831 | ureA-STA | |
| ureB | - | 3767442..3767816 | urease (beta subunit) | COG0832 | ureB-STA | |
| ureC | - | 3765736..3767445 | urease (alpha subunit) | COG0804 |
| Operon evidence: | Northern blotting (2.6 kb transcript) |
|---|---|
| Reference: | Cruz Ramos H, et al. (1997), Yoshida K, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CodY | Negative | ND | ND | ND |
Debarbouille M, et al. (1997): DP DB |
| GlnR | Negative | +7:+23 | 3768947..3768963 | TGTAAACTTTTATAACA |
Wray LV Jr, et al. (1997): DB DP PE |
| GlnR | Negative | -99:-83 | 3769052..3769068 | TGTGAATAAATATAACA |
Wray LV Jr, et al. (1997): DB DP PE |
| PucR | Positive | -78:-54 | 3769023..3769047 | AAGAAGCTGATTTGGTCAAGGTAAC |
Brandenburg JL, et al. (2002): RG |
| SigA | Promoter | -38:+8 | 3768962..3769007 | TTCTTTGAATTAATAGGCCTCTTCTATATAATGATGACATAAGTTG |
Wray LV Jr, et al. (1997): PE RG |
| SigH | Promoter | -44:+4 | 3768397..3768444 | AACAATTGGAAGGAATTCAGATTTTAATTGTCGAACTAGTCAGACAAG |
Wray LV Jr, et al. (1997): PE RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGACGCGGCCGGAGTGCATCCGGCCGTTCTATTGACTAAAA >>>>>>>> <<<<<<<< |
ureC |
|