Regulated Operon: ykuJK-ykzF-ykuL-ccpC

Genes
Genes Synonyms Direction Genome position Function COG ID Genus clusters
ykuJ
+ 1483423..1483662
COG4703  
ykuK
+ 1483772..1484290
COG1978  
ykzF
+ 1484424..1484621

 
ykuL
+ 1484759..1485202
COG0517  
ccpC ykuM + 1485351..1486232 transcriptional regulator (LysR family) COG0583  

Operon evidence: Northern blotting (2.8 kb transcript)
Reference: Blencke HM, et al. (2006), Kim HJ, et al. (2002)
Comments: An 1.8 kb ykzF-ykuL-ccpC transcript and a 0.9 kb monocistronic ccpC transcript were also detected.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CcpA Negative -81:-60 1485238..1485259 GAAAAAAGAAAGCGCATACATA Kim HJ, et al. (2002): GS FT
CcpC Negative -10:+15 1485309..1485333 GGGAGATAAGAAAAACTTATTGATA Kim HJ, et al. (2002): GS FT
SigA Promoter -44:+10 1485275..1485328 GGGCTTGAATAAGAAACTAAGATTTTATTAGAATGGGAGATAAGAAAAACTTAT Kim HJ, et al. (2002): PE

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
TTAAAGACAGCGAGGTGCTGTCTTTTTTTTATTTATC
     >>>>>>     <<<<<<
1486234..1486250
2..18
-11.2
 ccpC

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai