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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | ykzB-ykoL |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| ykzB | + | 1397246..1397401 | ||||
| ykoL | + | 1397489..1397671 |
| Operon evidence: | primer extension experiments for both genes |
|---|---|
| Reference: | Robichon D, et al. (2000) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| unknown | Promoter | -42:+8 | 1397175..1397224 | AAGAATAATGCGTAACACCCAAGCGCGTTTTATCCTTTATGTAACGAATC |
Robichon D, et al. (2000): PE |
| TnrA | Positive | -57:-41 | 1397159..1397175 | CGGAAGAAAAATTAACA |
Robichon D, et al. (2000): PE DB DP |
| PhoP | Positive | -72:-13 | 1397389..1397448 | AAAATCTTCGTAAACATAAATTCTTTACATTAGATTCATACCACGTTCATTTAAAAAGAG |
Robichon D, et al. (2000): RG PE Pragai Z, et al. (2004): FT GS Abdel-Fattah WR, et al. (2005): RO |
| SigA | Promoter | -39:+5 | 1397422..1397465 | ATTCATACCACGTTCATTTAAAAAGAGTATCTTTTGTATAGGAT |
Robichon D, et al. (2000): NB PE |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AATTATCCTTATACAAGATAATGTATAAGGATTTTTTTGCTTTTAG >>>>>>>>>> <<<<<<<<<< |
ykoL |
|