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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | yocH |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| yocH | - | 2092110..2092973 | COG1388 |
| Operon evidence: | Northern blotting |
|---|---|
| Reference: | Howell A, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Negative | ND | ND | ND |
Hamon MA, et al. (2004): AR RT-PCR |
| SigA | Promoter | -44:+5 | 2093009..2093057 | TTTTTGTTATTGATTTGACATTTACGTGTGTTACGATATCACCTGTTAG |
Howell A, et al. (2003): PE |
| YycF | Positive | -80:-51 | 2093064..2093093 | TCCTTCATGTAAAGGAACTGTAATCTAAAT |
Howell A, et al. (2003): GS FT |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| ATAGATTGTGATAAAAGACATAAGCTTTTGGCTTGTGTCTTTTTTTGTTCTGCT >>>>>>>>>> <<<<<<<<<< |
yocH |
|