Regulated Operon: citB

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
citB
+ 1926680..1929409
COG1048C citB-BAC  

Operon evidence: Genome analysis
Reference:
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Positive -35:+14 1926577..1926625 TTTACTTATGTATGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTG Kim HJ, et al. (2003): RG FT
CcpC Negative -75:-52 1926537..1926560 TCATAAGTCGAACTTATTGTATTT Jourlin-Castelli C, et al. (2000): GS FT
CcpC Negative -35:-22 1926572..1926590 TGATATTTACTTATGTATG Jourlin-Castelli C, et al. (2000): GS FT
CodY Negative ND ND ND Kim HJ, et al. (2002): RG FT
CodY Negative ND ND ND Kim HJ, et al. (2002): RG FT
SigA Promoter -48:+18 1926564..1926629 AAAAACATTGATATTTACTTATGTATGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTGATGG Whipple FW, et al. (1992): RO
TnrA Positive ND ND ND Blencke HM, et al. (2006): RG

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
AGGAAGAGAAGGCATTTCGCTTTCTCTTCTTTTTATGACAC
     >>>>>>>>     <<<<<<<<
1929424..1929444
15..35
-13.6
citB

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai