Regulated Operon: fla-che

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
flgB
+ 1691278..1691667
COG1815N flgB-BAC  
flgC
+ 1691667..1692119
COG1558N flgC-BAC  
fliE
+ 1692130..1692450
COG1677NU x1412-BAC  
fliF
+ 1692496..1694106
COG1766NU  
fliG flaA15 + 1694119..1695135
COG1536N fliG-BAC  
fliH
+ 1695254..1695880
COG1317NU  
fliI
+ 1695877..1697193
COG1157NU  
fliJ cheF + 1697196..1697639
COG2882NUO  
ylxF
+ 1697651..1698265
COG3334S  
fliK
+ 1698278..1699741
COG3144N  
ylxG
+ 1699738..1700160
COG1843N  
flgE flgG + 1700182..1700976
COG4786N x1650-BAC  
Bsu1630a
+ 1700312..1700527 Uncharacterized conserved protein, possibly involved in motility
 
fliL
+ 1701228..1701650
COG1580N  
fliM
+ 1701684..1702682
COG1868N fliM-BAC  
fliY cheD + 1702672..1703808
COG1776NT  
cheY cheB + 1703834..1704196
COG2204T x0812-BAC-1 x0812-BAC-2  
fliZ
+ 1704211..1704870
COG3190N  
fliP
+ 1704863..1705528
COG1338NU  
fliQ
+ 1705543..1705812
COG1987NU x0122-BAC  
fliR
+ 1705820..1706599
COG1684NU fliR-BAC  
flhB
+ 1706599..1707681
COG1377NU x0186-BAC  
flhA
+ 1707714..1709747
COG1298NU flhA-BAC  
flhF
+ 1709747..1710847
COG1419N  
ylxH
+ 1710838..1711734
COG0455D  
cheB cheL + 1711736..1712809
COG2201NT  
cheA cheN + 1712815..1714833
COG0643NT  
cheW
+ 1714855..1715325
COG0835NT cheW-BAC-1 cheW-BAC-2  
cheC ylxJ + 1715344..1715973
COG1776NT  
cheD ylxK + 1715970..1716470
COG1871NT  
sigD flaB + 1716493..1717257
COG1191K sigD-BAC  
ylxL
+ 1717286..1717789

 

Operon evidence: RNAse protection assay; insertional mutagenesis; deletion of the promoter upstream of flgB
Reference: Werhane H, et al. (2004), Marquez-Magana LM & Chamberlin MJ (1994), Estacio W, et al. (1998)
Comments: Some readthrough into downstream rpsB. The terminator may be factor-dependent. Internal promoter in front of sigD.


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigA Promoter -44:+3 1691170..1691216 CGAACTTCATAGACTTTATGCCTGTTATTTCTTACAATAAGCATATA West JT, et al. (2000): PE DP, Western blot
Estacio W, et al. (1998): PE
SigD Promoter -41:+11 1691011..1691062 CATTTTTCTTCAAAAAGTTTCAAAAATGCCGAAAAGAAAGGAGAAAAAACAG Gilman MZ, et al. (1984): RNA probes
Estacio W, et al. (1998): PE
Spo0A Negative ND ND ND Molle V, et al. (2003): GS CH
DegU Negative ND ND ND Amati G, et al. (2004): RG GS
DegU Positive -106:-66 1691108..1691148 CTAACAATCTAGGACTTTATACCTAGTTGCAAAATAGATAA Tsukahara K, et al (2008): FT
Kobayashi K, et al. (2010): AR HB DB GS
DegU Positive +115:+145 1691328..1691356 AGCGGATATTAAGCAAAAAGTCATAACTA Tsukahara K, et al (2008): FT
Kobayashi K, et al. (2010): AR HB DB GS
SigA Promoter -44:+7 1716433..1716483 ATATTCGAACTGTTAAACAAGGTGAAAAAACGATTTAATTAAGGTATTAGG Allmansberger R (1997): PE DP

Terminator

No Data

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai