Regulated Operon: rapC-phrC

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
rapC yclL + 428831..429979
COG1729S  
phrC
+ 429963..430085

 

Operon evidence: transcriptional fusions; downstream gene is in the opposite direction
Reference: Carter HL 3rd, et al. (1990), Lazazzera BA, et al. (1999)
Comments: Northern blotting results in BSORF show various transcripts in this region.

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
CodY Negative ND ND ND Lazazzera BA, et al. (1999): RG
ComA Positive -72:+7 428727..428805 TTGCGTGCTCCCGAAAACAAAGATTGCGTGTTTTTCGGGTTGGGACGGCCTATAAACATGATAAAATATGACATAAACA Lazazzera BA, et al. (1999): DP HM PE
Bongiorni C, et al. (2005): GS
SigA Promoter -36:+4 428763..428802 GGGTTGGGACGGCCTATAAACATGATAAAATATGACATAA Lazazzera BA, et al. (1999): PE
SigH Promoter -40:+3 429840..429882 TAGAGGATTTAGCCCTAGAAGTAGCAAAATATTACTATGAACA Carter HL 3rd, et al. (1990): PE RO, in-vitro transcription
Lazazzera BA, et al. (1999): RG DB

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
ACAAGCCCCTTCTCATTAGCGAGAAGGGGTTTTTCTTTTCAAAA
     >>>>>>>>>      <<<<<<<<<
430093..430116
8..31
-18.1
 phrC

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai