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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2007
Contact: Kenta Nakai |
| Regulated Operon: | gltAB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| gltA | - | 2009280..2013842 | glutamate synthase (large subunit) | COG0070 | ||
| gltB | - | 2007782..2009263 | glutamate synthase (small subunit) | COG0493 | gltB-STA x1459-BAC |
| Operon evidence: | Northern blotting (6.1 kb transcript) |
|---|---|
| Reference: | Yoshida K, et al. (2003) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| GltC | Positive | -90:+20 | 2013879..2013988 | GTTTGTCTCACATCCATCTATCTCATTTTGAGATTCTTTTGATCTAAATTATATATTGTTTATATCGTTTTGAAAACCTACAATGATTATAGAGTTGTTAGATTTTATGA |
Belitsky BR, et al. (1995): SDM DP Piccossi S, et al. (2007): FP Commichau FM, et al. (2007): RG, in vivo protein interaction assay Bohannon DE, et al. (1989): S1 |
| GltR | Positive | -71:-57 | 2013955..2013969 | ATCTCATTTTGAGAT |
Belitsky BR, et al. (1997): DB DP SDM |
| GltR | Positive | -49:-35 | 2013933..2013947 | ATCTAAATTATATAT |
Belitsky BR, et al. (1997): DB DP SDM |
| SigA | Promoter | -47:+18 | 2013881..2013945 | CTAAATTATATATTGTTTATATCGTTTTGAAAACCTACAATGATTATAGAGTTGTTAGATTTTAT |
Bohannon DE, et al. (1989): S1 Belitsky BR & Sonenshein AL (1997): PE |
| TnrA | Negative | +1:+26 | 2013873..2013898 | AGAGTTGTTAGATTTTATGACCGGTA |
Belitsky BR, et al. (2000): FT Yoshida K, et al. (2003): AR HM GS |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGAAACCGGTCTGGCTGCCAGCCGGTTTCTTTTTTTATTC >>>>>>>>> <<<<<<<< |
gltB |
|