Regulated Operon: yjbCD

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
yjbC
+ 1226938..1227516

 
yjbD spx, spxA + 1227697..1228092
COG1393P x0334-BAC-2 x0510-STR  

Operon evidence: Northern blotting (1.2 kb transcript)
Reference: Antelmann H, et al. (2000)
Comments:

Promoters

Binding
factor		 Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
SigB Promoter -42:+6 1226864..1226911 TAAGGCTGTTTAAACAAGAAGAAATGGGGTATATCTAAAAGTATGAAG Petersohn A, et al. (1999): PE HB
Antelmann H, et al. (2000): PE NB
SigW Promoter -40:+4 1226822..1226865 AAAAATGAAACCATGGCGGAAGTTCGCACGTCTTTATAGATGTA Antelmann H, et al. (2000): PE NB
Cao M, et al. (2002): HM RO RG DB
Cao M, et al. (2002): AR
unknown Promoter -39:+6 1226790..1226835 GAACGGAGCAGCTGGCTCCGTTTTGCTGAAAAAAAAATGAAACCAT Antelmann H, et al. (2000): PE NB
SigX Promoter -40:+4 1226822..1226865 AAAAATGAAACCATGGCGGAAGTTCGCACGTCTTTATAGATGTA Antelmann H, et al. (2000): PE NB
Cao M, et al. (2002): HM RO RG DB
Cao M, et al. (2002): AR
PerR Negative -40:+40 1227579..1227658 GATACTGTTCACACTTACTTTTTTATAGTATAATACCTGTAAAGATTCCTTTTTTAGAGTAATTTCAATTTAAGAATAAA Leelakriangsak M, et al. (2007): FT
SigA Promoter -49:+10 1227570..1227628 TTTTCTTAGGATACTGTTCACACTTACTTTTTTATAGTATAATACCTGTAAAGATTCCT Leelakriangsak M, et al. (2007): PE
SigM Promoter -50:+10 1227524..1227583 TAAGAACATATCATGAACATTAAAAATTTGCTGGATTGACACATTTTTTTCTTAGGATAC Leelakriangsak M, et al. (2007): ND
Thackray PD, et al. (2003): RG
YodB Negative -40:+10 1227579..1227628 GATACTGTTCACACTTACTTTTTTATAGTATAATACCTGTAAAGATTCCT Leelakriangsak M, et al. (2007): FT

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]		 Downstream of
CAAAAGAAGGCTGAGTCATCAGCCTTCTTTTATTTTTCAACC
     >>>>>>>>>    <<<<<<<<<
1228111..1228132
19..40
-16.8
 yjbD

Overview



Upper Region
Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai