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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | citB |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| citB | + | 1925889..1928618 | aconitate hydratase (aconitase) | COG1048 | citB-BAC |
| Operon evidence: | Genome analysis |
|---|---|
| Reference: | |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| AbrB | Positive | -35:+14 | 1925786..1925834 | TTTACTTATGTATGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTG |
Kim HJ, et al. (2003): RG FT |
| CcpC | Negative | -75:-52 | 1925746..1925769 | TCATAAGTCGAACTTATTGTATTT |
Jourlin-Castelli C, et al. (2000): GS FT |
| CcpC | Negative | -35:-22 | 1925781..1925799 | TGATATTTACTTATGTATG |
Jourlin-Castelli C, et al. (2000): GS FT |
| CodY | Negative | ND | ND | ND |
Kim HJ, et al. (2002): RG FT |
| CodY | Negative | ND | ND | ND |
Kim HJ, et al. (2002): RG FT |
| SigA | Promoter | -48:+18 | 1925773..1925838 | AAAAACATTGATATTTACTTATGTATGATTTTGTTTTAATATGAAATTGTGAGAAAATTGTGATGG |
Whipple FW, et al. (1992): RO |
| TnrA | Positive | ND | ND | ND |
Blencke HM, et al. (2006): RG |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| AGGAAGAGAAGGCATTTCGCTTTCTCTTCTTTTTATGACAC >>>>>>>> <<<<<<<< |
citB |
|