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Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2006
Contact: Kenta Nakai |
| Regulated Operon: | phoPR |
| Genes | Synonyms | Direction | Genome position | Function | COG ID | Genus clusters |
|---|---|---|---|---|---|---|
| phoP | - | 2976839..2977561 | two-component response regulator | COG0745 | phoP-BAC phoP-STA x1129-BAC | |
| phoR | - | 2975107..2976846 | two-component sensor histidine kinase | COG0642 |
| Operon evidence: | Northern blotting (2.7 kb transcript) |
|---|---|
| Reference: | Seki T, et al. (1988), Pragai Z, et al. (2004) |
| Comments: |
| Binding factor |
Regulation | Location | Absolute position | Binding seq.(cis-element) | Experimental evidence |
|---|---|---|---|---|---|
| CcpA | Negative | +5:+34 | 2977703..2977732 | TTTACTATAAATGAAAGCGCTATCATAAAC |
Puri-Taneja A, et al. (2005): DB RG SDM GS FT |
| PhoP | Positive | ND | 2977766..2977794 | TGTCATGAAAGTATTATCCTAATAAAAAG |
Paul S, et al. (2004): FT RG |
| PhoP | Positive | ND | 2977658..2977711 | ATCATAAACGTCTTTATTTCTTTTAAAAATGATGTAAAAGGCGAATTGTCGGAA |
Pragai Z, et al. (2004): FT GS Paul S, et al. (2004): FT RG |
| PhoP | Positive | ND | 2977600..2977639 | ATAAAATCATGAAACATGTTAAGATGACATAAAATAGAGA |
Pragai Z, et al. (2004): FT GS |
| PhoP | Positive | ND | 2977494..2977522 | ATTGTTACTCTTTTACAGTACAATTTGGA |
Paul S, et al. (2004): FT RG |
| ResD | Positive | ND | ND | ND |
Sun G, et al. (1996): DB |
| SigA | Promoter | -40:+4 | 2977627..2977670 | CGAATTGTCGGAATGTCCTGCTTTCGCTAAAATAAAATCATGAA |
Pragai Z, et al. (2004): NB PE Paul S, et al. (2004): PE, in-vitro reconstitution |
| SigA | Promoter | -39:+6 | 2977605..2977649 | TTTCGCTAAAATAAAATCATGAAACATGTTAAGATGACATAAAAT |
Pragai Z, et al. (2004): NB PE Paul S, et al. (2004): PE, in-vitro reconstitution |
| unknown | Promoter | -47:+5 | 2977651..2977702 | GTCTTTATTTCTTTTAAAAATGATGTAAAAGGCGAATTGTCGGAATGTCCTG |
Paul S, et al. (2004): PE |
| SigA | Promoter | -45:+4 | 2977733..2977782 | ATTATCCTAATAAAAAGAGAGAAAGGCTTGCTTAATACAGCCTTTCTCTT |
Puri-Taneja A, et al. (2005): PE, in-vitro reconstitution |
| SigB | Promoter | -38:+8 | 2977577..2977622 | GTTAAGATGACATAAAATAGAGAAATAGGATGTCGGGGAATTATAA |
Paul S, et al. (2004): PE, In-vitro reconstitution, DB (unclear result) |
| SigE | Promoter | -43:+7 | 2977593..2977642 | AAAATAAAATCATGAAACATGTTAAGATGACATAAAATAGAGAAATAGGA |
Paul S, et al. (2004): PE, In-vitro reconstitution, DB |
| Terminator sequence | Absolute position | Position from stop codon | Free energy [kcal/mol] |
Downstream of |
|---|---|---|---|---|
| TTGACGGCGGGAACCTATTTGTGTTCCCGTCCTTTTTTGTGTCTTCT >>>>>>>>> <<<<<<<<< |
phoR |
|