Regulated Operon: comK

Genes
Genes Synonyms Direction Genome position Function COG ID Conserved groups
comK
+ 1117109..1117687
COG4903K x1066-BAC  

Operon evidence: Genome analysis; upstream and downstream gene are on the opposite strand
Reference: Van Sinderen D, et al. (1994)
Comments:


Promoters

Binding
factor
Regulation Location Absolute position Binding seq.(cis-element) Experimental evidence
AbrB Negative -81:+39 1116992..1117111 CATTAAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAAGGATGGAGGCCATAATATG Hamoen LW, et al. (2003): FT
Hahn J, et al. (1994): DB
CodY Negative -77:-13 1116996..1117060 AAATATCATTAAAAGATGATTTTATCTTAAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGAT Serror P, et al. (1996): DB FT GS
ComK Positive -118:-83 1116955..1116990 TGAAAGTAAAATCGGTTTATTACTAGTCATTTAGTA Van Sinderen D & Venema G (1994): RG OV DB; Western blot
Van Sinderen D, et al. (1995): GS
Hamoen LW, et al. (1998): FT
Berka RM, et al. (2002): AR HM
ComK Positive -83:-55 1116990..1117018 ACCATTAAATATCATTAAAAGATGATTTT Van Sinderen D & Venema G (1994): RG OV DB; Western blot
Van Sinderen D, et al. (1995): GS
Hamoen LW, et al. (1998): FT
Berka RM, et al. (2002): AR HM
DegU Positive -102:-73 1116971..1117005 TTATTACTAGTCATTTAGTACCATTAAATATCATT Hahn J, et al. (1994): DB
Van Sinderen D & Venema G (1994): RG DB; Western blot
Ogura M, et al. (1996): DB RG
Hamoen LW, et al. (2000): GS FT
Shimane K & Ogura M (2004): SDM RG
Med Positive ND ND ND Ogura M, et al. (1997): DP
Rok Negative ND ND ND Hoa TT, et al. (2002): GS DB RG OV
Albano M, et al. (2005): GS
SigA Promoter -49:+20 1117024..1117092 AAATGTTAAAAAAACCTGTCGTTTTACAAAAACAGATGATAGATTATTAGTATAAATTTTGCAGAAAAA Van Sinderen D, et al. (1994): PE
Spo0A ND ND ND ND Molle V, et al. (2003): GS CH

Terminator

Terminator sequence Absolute position Position from stop codon Free energy
[kcal/mol]
Downstream of
ATTAGAAAAATAGGAAGGAGCTGACCGAACAGGGCAGCTCCTTTCATAAAGCTATG
                >>>>>>>>>>     <<<<<<<<<<
1117699..1117723
12..36
-16.7
comK

Overview



Upper Region






Copyright: Human Genome Center, Inst. Med. Sci., Univ. Tokyo; 1999-2008
Contact: Kenta Nakai