Transcription factor: Hpr

Factor type	Unique (MarR Family)
SWISS-PROT	ND
SubtiList	ND
Consensus seq.	[A/G]ATANTAT[T/C]
Comment	One of the transition-state regulators (like Sin) used during the transition state between vegetative growth and the onset of sporulation; transition-state regulators are reviewed in Strauch, M.A. and Hoch, J.A., 1993
Link to	Phylogenetic profile, Weight matrix & Motif alignment

Operon	Regulated Gene	Sigma	Regulation	Absolute position	Location	Binding seq.(cis-element)	Experimental evidence
appDFABC	appD	None	Negative	ND	ND	ND	Koide A, et al. (1999): DB OV
aprE	aprE	SigA	Negative	`1105921..1105950`	`-324:-295`	AGTTTATTTTTCAGAATACTTTTATCATCA	Higerd TB, et al. (1972): serine protease activity Ferrari E, et al. (1986): DB RG Henner DJ, et al. (1988): DP RG DB NB PE Henner DJ, et al. (1988): Genetics and biotechnology of Bacilli, vol.2 pp.3-9: DP RG Kallio PT, et al. (1991): GS FT Abe S. et al. (2009): Disruption of glnA, glutamine synthetase gene
aprE	aprE	SigA	Negative	`1105893..1105918`	`-292:-267`	CTTTGAAAAAATATCACGATAATATC	Higerd TB, et al. (1972): serine protease activity Ferrari E, et al. (1986): DB RG Henner DJ, et al. (1988): DP RG DB NB PE Henner DJ, et al. (1988): Genetics and biotechnology of Bacilli, vol.2 pp.3-9: DP RG Kallio PT, et al. (1991): GS FT
aprE	aprE	SigA	Negative	`1105685..1105705`	`-79:-59`	TGATATACCTAAATAGAGATA	Higerd TB, et al. (1972): serine protease activity Ferrari E, et al. (1986): DB RG Henner DJ, et al. (1988): DP RG DB NB PE Henner DJ, et al. (1988): Genetics and biotechnology of Bacilli, vol.2 pp.3-9: DP RG Kallio PT, et al. (1991): GS FT
aprE	aprE	SigA	Negative	`1105640..1105661`	`-35:-14`	TACTAAAATATTATTCCATCTA	Higerd TB, et al. (1972): serine protease activity Ferrari E, et al. (1986): DB RG Henner DJ, et al. (1988): DP RG DB NB PE Henner DJ, et al. (1988): Genetics and biotechnology of Bacilli, vol.2 pp.3-9: DP RG Kallio PT, et al. (1991): GS FT Abe S. et al. (2009): Disruption of glnA, glutamine synthetase gene
epr	epr	SigD	Negative	`3939509..3939537`	`-332:-304`	AGACAGACCCGATAATAATCAGCGGCATG	Kodgire P, et al. (2006): DP RG GS DB SDM
ispA	ispA	SigA?	Negative	ND	ND	ND	Ruppen ME, et al. (1988): DB RG
nprE	nprE	None	Negative	`1541717..1541742`	`-107:-82`	CTTGATATTATTCAACAAAAACAAAC	Higerd TB, et al. (1972): neutral protease activity Kallio PT, et al. (1991): GS FT
nprE	nprE	None	Negative	`1541639..1541661`	`-26:-4`	GAATGCTAGTTTAATATAACAAT	Higerd TB, et al. (1972): neutral protease activity Kallio PT, et al. (1991): GS FT
oppABCDF	oppA	None	Negative	ND	ND	ND	Koide A, et al. (1999): DB OV
sinIR	sinI	SigA	Negative	`2552238..2552267`	`-86:-57`	ATCTGCAAAATAATATTTCAAGCTAACTTT	Kallio PT, et al. (1991): FT Shafikhani SH, et al. (2002): FT RG
sinIR	sinI	SigA	Negative	`2552312..2552337`	`-12:+14`	TATAATAAAGGTATATTGGAAAAAAA	Kallio PT, et al. (1991): FT Shafikhani SH, et al. (2002): FT RG
yclF	yclF	SigA?	Positive	`417769..417797`	None	AATGAGTATAAATTATATTGACACAAGTA	Caldwell R, et al. (2001): AR HM
yclF	yclF	SigA	Positive	`417741..417769`	None	ATTATATAAGAATATGATTTTTATAATAC	Caldwell R, et al. (2001): AR HM
ywfBCDEFG	ywfB	SigA	Negative	`3874209..3874262`	`-53:+1`	ATCAATATTTTCAAAAAACATTGACAGTTCAATTTCCACTGGATAAAATTTACT	Inaoka T, et al. (2009): PE, GS
phoPR	phoP	SigA,B,E	Negative	`2978716..2978759`	`-237:-193`	AAAATGTCATGAAAGTATTATCCTAATAAAAAGAGAGAAAGGCT	Kaushal B, et al. (2010): PE,FT
phoPR	phoP	SigA,B,E	Negative	`2978588..2978609`	`-87:-66`	TTCGCTAAAATAAAATCATGAA	Kaushal B, et al. (2010): PE,FT
phoPR	phoP	SigA,B,E	Negative	`2978528..2978578`	`-56:-6`	GATGACATAAAATAGAGAAATAGGATGTCGGGGAATTATAATACTGGAGGC	Kaushal B, et al. (2010): PE,FT
hag	hag	SigD	Negative	`3635992..3636009`	`-17:+1`	AATCCGATATTAATGATG	Kodgire P, et al. (2008): GS SDM
hag	hag	SigD	Negative	`3635878..3635892`	`+10:+24`	AACCACAATATTGCA	Kodgire P, et al. (2008): GS SDM